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Root Superuser binary versus app

Feel free to call me an idiot after you hear this.
I rooted my phone with vampirefo's 2.7 kernel and now have FroyoRC2. I was on the app market and saw Superuser there. I decided hey theres an upgrade that supports the dev and i think i'll get that. I downloaded it and installed it. Later realized there is a difference between the kernel superuser installl and this market app install. Can I reflash vampirefo's 2.7 kernel to make sure I didnt mess anything up? I have been having slowness issues and am thinking its related to the superuser market app obviously not being compatible with the Superuser that came with the kernel.

UPDATE: Okay I decided to try reflashing anyway. It worked. I didnt hurt my phone. Now to just see if my slowness issues are over with. will update after a day or two.
 
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