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Do you have the paid version or just the free one? IIRC, the free one only lets you back up an app at a time, whereas the paid version allows batch backup/restore. It was the first app I bought when I rooted my phone... it's not overly expensive and worth it for the ability to do things in batch, rather than one at a time
The paid one also offers xml-based backups of some stuff like messages, which you can then reload on a different ROM (otherwise not a good idea to restore the normal message app data to different ROMs). And can restore apps from some types of nandroid backups.
Sure there are others, but I've also been using paid for a long time.