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Root Transferring books

Maybe I'm missing something simple.
I have a load of books on my nook.
I've rooted the SD for now, and would like to add the books to the Cm7.

when I boot the CM7 I plug into my laptop via usb but nothing loads up (no Folders).
When I put the sd card in my usb reader it only reads the boot files not any folders.
 
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