Wow I didn't know you can disable it, but at the time that my malfuntion happened I was using Ubuntu Precise, so I know that wasn't the culprit for me, but could very well be someone else's nightmare!
Edit: I just know that I figured it out when I read about people not properly ejecting their devices (or unmounting...whatever your case may be) so it does something weird to the card and thus makes it unreadable in other devices. What was strange though is that my card wouldnt mount in CWM or TWRP but i was able to read/write to it through es file manager until I properly formatted and powered down the drive