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Its indeed very odd. All I can suggest is try another rom / version of that rom see if its the same. If you wiped data and dalvik cache etc, theres not much else you can do.

Only you Set CPU clocking settings as they were set with another kernel. Just need to autodetect settings and its sorted.

All I meant is if you are using SetCPU to overclock, you will need to autodetect to pick up the new kernel. If you're not using SetCPU, nothing to bother with. Of course you can't overclock.
