first and foremost,my obligatory "you should have known better" lecture. sorry im too tired to type it all again,however
im glad this worked out for you,as its possible that you could be holding a very expensive paperweight in your hands right now instead of a working phone becasue of it.
hopefully in the future youll research things a little closer,and you have learned your lesson about tryiing to accept OTA updates. clockwork recovery cannot install them,and apparently it cannot block them,as it does on other devices. if you want to install an official OTA(for whatever reason) youll need to unroot first
id also advise you that if you(also for whatever reasons) want to stay on stock,rooted firmware,you will need to keep your eyes and ears open on the forums. whenever there is an OTA,it will be turned into a flashable rom so that you can contiune running the same firmware as the nonrooted phones of the world. its the same code.... you just have to flash your updates in recovery rather than getting them OTA.
if you want to flash and forget,might want to consider running a custom rom,as they are usually built without the parts of the stock rom that check for and instigate OTAs
i dont mean to pick on you,but just want to drive this point home for you and others that may be readin along now,or in future searches... DO NOT ATTEMPT TO TAKE AN OTA WHILE ROOTED
*stepping off of soapbox... lecture over
please be aware that info is everywhere about this... with 3 or 4 threads on the first page of the root forum alone. im not quite sure why you posted this in general. if you are rooted and wish to stay that way,you might want to start frequenting that section,even if you dont have any interest in flasheing a bunch of custom roms.heres a hint: start with the stickys
your issue could have been easily remedied by:
1)not taking the update,obviously

2)having made a recent nandroid backup that you could have restored
3)failing 1 or 2,that you had at least backed up your apps with a root program like titanium backup or mybackup pro.
again,im no intending to pick on you,but you,and others reading this in a quest for info in the future,need to be aware how it could have been avoided.
*second lecture over*