OK thanks for trying a few times alex. Sounds like starting over is the way to go... like wrap said.
When I rooted my phone the first time I had no idea what I was doing, still barely do, but all I had access to was my linux OS. There was no "one click root" for linux then. I ended up following some directions similar to the ones out for 3.3 now. I screwed it up. Not as bad as I thought though. I was walking around with a partially rooted phone for a few weeks. I never had s-off, and I didn't know where to start from to finish the process.
Then UR came out with a linux version. I unrooted, rooted, backed everything up and had a Fresh ROM in my EVO faster than I would have ever expected. I'd never go back to stock now.
Anyway the moral of my long story is start over. It worked for me.