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Root stopping system updates

I assume you're talking about app updates rather than O/S updates ..

Go into Play and click Menu .. Setting then un-tick Auto-update apps

That ought to do it.
 
If you don't want sense ROMs to check for OTA updates from HTC, do this:
SteelH said:
Navigate to Menu/Settings/System Updates/HTC Software Update/Scheduled check, and uncheck it.
 
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