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.Yeah, it sounds like you didn't get root properly installed--i.e., perhaps you didn't get the bootloader unlocked (which would explain why the UPDATE-SuperSU-v2.46.zip didn't flash successfully)?
I skimmed through the page from the link you cited above for rooting your device...did you encounter any issues, warnings, errors while doing this and can you double-check that you bootloader is indeed unlocked?
edit: another thought--were you able to actually run the custom recovery (CWM or TWRP) to try to flash the .zip file?

I haven't flashed CWM for years after my little bricking incident [...]