Let me post some screenshots. The pictures I am cropping came from an SLR not the native camera so I guess I need to explore further.
Cropped Using Old Gallery:
Cropped Using new Gallary:
Images are from Olympus RAW converted to JPG using lightroom. (not that it should matter) The resolution is 10MP.
Clock is not a widget it's in the app drawer. I have both "Alarm and Timer", as well as another application called "Clock". The clock is the one that will force close when I click the area that says "weather is unavailable". It wasn't there before the update so I'm assuming I got it from either the 2.3.9 or 2.3.13 Nandroid.
I'm also getting force closes from some parts of the development tools (I went poking around in there but didn't change anything).
I don't think the duplicates were from a theme or from TI Backup. I did not do a restore from Ti-Backup, I noticed the duplicates after upgrading from 2.3.6 to 2.3.13 using the Advanced System Restore Nandroid method.