Follow along with the video below to see how to install our site as a web app on your home screen.
Note: This feature may not be available in some browsers.
There is nothing to do(correction) in the ROM.
I can Guide u how to install it if u want.
hmmm.. i'l try ashwa's first ....
til den can u reupload ur own rom minus d glitches ( uknow all d files dat need to be dere and all d files dat dont !!! ) just to make r task easier...

Will try and let you know !I m using link2sd on hybrid 3,having 52 apps all linked to 2nd partition which is ext3.I m facing none of this problem except quick reboot(i never use it but i tried after ur post).
I will like to know whether you disabled a2sd in the rom 1st before using link2sd???rom has dta2sd feature that u need to disable 1st.2 script will try to mount sdext on reboot which creates problem for u,this what i think of ur problem.And a2sd & link2sd both creates different links.a2sd directly links "app" & "app-private" folder while Link2sd links individual app. If u don't have disable dta2sd then tell me i will tell u what to do next.
man do watever deres to be done.. reomve nd put nythng ..bt just make it a one step installable rom like it shuld be !!!

No worry bro,try the new link n let us know how it is.yup srry guys .. i dint know dat d link was updated.. srry for being so buggy...
its just dat my practicals r goin on and i aint getting tym to read all d posts ....
dude they are two different partitions i.e until and unless u format them separately or the ROM installation has a command line to format data partition its never partition,it gets overwritten if its not formatted and thats why callibration with system sometimes fail so its advisable to format system,battery stat,factory reset,data to get the best results while going to stockSee when you format system everything is deleted even cache partition except dalvik cache and don't forget battery stats