Funny you should mention this. (NOTE: I did not install APeX yet).
I used the 928 black glass theme to deodex. Then I installed Tom's blackbar mod, as well as Fab's vanilla lock slider and Nextheme. Things were running ok, but the combination of the themes was bothering me.
So, I restored my nandroid backup via Droid X Bootstrapper and all is well. Except for the fact that my signal status meter is now twonked. Maybe installing themes etc can cause it to be messed up?
So I did a *22899 and it did not make it any better. So did a *228 option 2 and its a lil better, but not like it was before I themed my X.
At this point, I may just deal and wait for Fab to release APeX 1.0 to give it a shot with a clean install. If not, may just do a factory reset and hope for the best. If you find anything out, let me know and I will do the same.
Cheers.
P.S. Anyone have issues trying to manually deodex? I tried this and it just sat at starting daemon.
[HOW-TO] Manually deodex your phone.
Thanks!